Freddy L. Gonzalez, Gwenddolen Kettenburg, Hafaliana Christian Ranaivoson, Angelo Andrianiaina, Santino Andry, Vololoniaina Raharinosy, Tsiry Hasina Randriambolamanantsoa, Vincent Lacoste, Philippe Dussart, Jean-Michel Héraud, Cara E. Brook
Publications
CEND affiliates and fellows are research leaders - publishing new discoveries to accelerate progress against neglected and emerging diseases.

September 10, 2025
Macrophages orchestrate elimination of Shigella from the intestinal epithelial cell niche via TLR-induced IL-12 and IFN-γ
Kevin D Eislmayr, Charlotte A Nichols, Fitty L Liu, Sudyut Yuvaraj, Janet Peace Babirye, Justin L Roncaioli, Jenna Vickery, Gregory M Barton, Cammie F Lesser, Russell E Vance
September 4, 2025
Lineage-specific defence systems of pandemic Vibrio cholerae
Melanie Blokesch and Kimberley D. Seed
September 1, 2025
Severe acute respiratory syndrome (SARS) mathematical models and disease parameters: a systematic review
Christian Morgenstern, Thomas Rawson, Isobel Routledge, Mara Kont, Natsuko Imai-Eaton, Janetta Skarp, Patrick Doohan, Kelly McCain, Rob Johnson, H Juliette T Unwin, Tristan Naidoo, Dominic P Dee, Kanchan Parchani, Bethan N Cracknell Daniels, Anna Vicco, Kieran O Drake, Paula Christen, Richard J Sheppard, Sequoia I Leuba, Joseph T Hicks, Ruth McCabe, Rebecca K Nash, Cosmo N Santoni, Gina Cuomo-Dannenburg, Sabine van Elsland, Sangeeta Bhatia, Anne Cori, Aaron Morris, Amy Dighe, Anna-Maria Hartner, Arran Hamlet, Ben Lambert, Bethan Cracknell Daniels, Charlie Whittaker, Cosmo Santoni, Cyril Geismar, Dariya Nikitin, David Jorgensen, Dominic Dee, Ed Knock, Ettie Unwin, Hayley Thompson, Ilaria Dorigatti, Jack Wardle, Joseph Hicks, Keith Fraser, Kelly Charniga, Kieran Drake, Lily Geidelberg, Lorenzo Cattarino, Mantra Kusumgar, Marc Baguelin, Pablo Perez Guzman, Paul Lietar, Rebecca Nash, Rich Fitzjohn, Richard Sheppard, Sequoia Leuba, Shazia Ruybal-Pesantez, Sreejith Radhakrishnan, Zulma Cucunuba Perez
September 1, 2025
Comparison of dengue, chikungunya, and Zika among children in Nicaragua across 18 years: a single-centre, prospective cohort study
Fausto Andres Bustos Carrillo, Sergio Ojeda, Nery Sanchez, Miguel Plazaola, Damaris Collado, Tatiana Miranda, Saira Saborio, Brenda Lopez Mercado, Jairo Carey Monterrey, Sonia Arguello, Lora Campredon, Zijin Chu, Colin J Carlson, Aubree Gordon, Angel Balmaseda, Guillermina Kuan, Eva Harris
August 30, 2025
Zika in Infants and Pregnancy (ZIP) study: results from a prospective international cohort study of prenatal Zika virus infection and adverse fetal and infant outcomes
Jill Farnell Lebov, Martha Nason, Kristen B Stolka, Ricardo Ximenes, Marisa M Mussi-Pinhata, Jack Moye, Carmen D Zorrilla, Carmen M Velez Vega, José F Cordero, Deolinda MF Scalabrin, Albert I Ko, Maria Elisabeth Lopes Moreira, Luiz Augusto Galvão, William Britt, Ernesto TA Marques, Angel Balmaseda, Eva Harris, Juan F Arias, Stacey Schultz-Cherry, Ana Lucía Garces, Nancy F Krebs, Theresa J Ochoa, César Augusto Ugarte-Gil, Elizabeth Fogleman, Erin Gabriel, Michael Welton, Carmen M Irizarry, Silvia Biason de Moura Negrini, Conrado Milani Coutinho, Demócrito de Barros Miranda-Filho, Ulisses Ramos Montarroyos, Marli Tenorio Cordeiro, Anna Gajewski, Jorge E Osorio, Lester Figueroa
August 27, 2025
A DNA nicking Class 1 OLD family nuclease mediates phage defense in Vibrio cholerae and is countered by a phage-encoded inhibitor
Patel KM and Seed KD
August 13, 2025
Longitudinal antibody profiling after dengue reveals distinct dynamics by antibody specificity over 18 months (Pre-print)
Sandra Bos, Tulika Singh, José Victor Zambrana, Elias Duarte, Reinaldo Mercado-Hernandez, Julia Huffaker, Aaron Graber, Angel Balmaseda, Eva Harris
August 12, 2025
Cellular mechanisms underlying beneficial versus detrimental effects of bacterial antitumor immunotherapy
Jesse Garcia Castillo, Sebastian Fernandez, Timothy Campbell, Diego Gonzalez Ventura, Jacob Williams, Julia Ybarra, Nicole Flores Hernandez, Elina Wells, Daniel A. Portnoy, Michel DuPage
August 11, 2025
Bridging the Gap: Enhancing the Evaluation & Interpretation of Epidemic Forecasts for Researchers & Policymakers in Resource-Constrained Settings [Pre-print]
Paula Christen, Loice Achieng Ombajo, Anne Cori, Jeanette Dawa, Bimandra A Djaafara, Teresia Njoki Kimani, Camille MJ Schneider, Sabine L van Elsland, Mwangi Thumbi, Maria Veras, Charles Whittaker, Lilith K Whittles, Oliver J Watson
August 4, 2025
Multi-contrast machine learning improves schistosomiasis diagnostic performance
María Díaz de León Derby, Charles B Delahunt, Ethan Spencer, Jean T Coulibaly, Kigbafori D Silué, Isaac I Bogoch, Anne-Laure Le Ny, Daniel A Fletcher
August 4, 2025
Cell surface crowding is a tunable energetic barrier to cell-cell fusion
Daniel SW Lee, Liya F Oster, Sungmin Son, Daniel A Fletcher
August 4, 2025
Therapeutic Potential of Cyclodextrins Targeting Dengue Virus and SARS-CoV-2 Infection and Pathogenesis
Pedro H Carneiro, E Vanessa Jimenez-Posada, Francielle Tramontini Gomes de Sousa, Scott B Biering, Trishna S Patel, Samhita Bhat, Sarah Stanley, John Pak, Peter Laing, Tamas Sohajda, Eva Harris, P Robert Beatty
August 4, 2025
Role of the gut microbiome in frequent gut colonization with extended-spectrum β lactamase-producing Enterobacterales among Peruvian children
Maya L Nadimpalli, Neha Sehgal, Luismarcelo Rojas-Salvatierra, Robert H Gilman, Ashlee M Earl, Colin J Worby, Madison Schwab, Amy J Pickering, Monica J Pajuelo
August 1, 2025
Biomarkers of environmental enteric dysfunction and neurodevelopmental outcomes among children in rural Bangladesh and Kenya: a prospective cohort study
Gene G Ho, Beryl S Achando, Shahjahan Ali, Caitlin Hemlock, Helen O Pitchik, Christine P Stewart, Fahmida Tofail, Md Ziaur Rahman, Mohammad Alauddin, Gouthami Rao, Holly N Dentz, John P Buleti, Cecilia Nekesa, Charles D Arnold, Syeda L Famida, Md Saheen Hossen, Palash Mutsuddi, Salma Akther, Jessica A Grembi, Sophia T Tan, Sarah T Alauddin, Theodora Meerkerk, Marlene K Wolfe, Priscah Cheruiyot, Sammy M Njenga, Abul K Shoab, Mahbubur Rahman, Leanne Unicomb, Benjamin F Arnold, Patricia Kariger, Alan E Hubbard, John M Colford Jr, Amy J Pickering, Clair Null, Stephen P Luby, Lia CH Fernald, Andrew N Mertens, Audrie Lin
July 29, 2025
Solid Evidence and Liquid Gold: Trade-Offs of Processing Settled Solids, Whole Influent, or Centrifuged Influent for Codetecting Viral, Bacterial, and Eukaryotic Pathogens in Wastewater
Sooyeol Kim, Denise Garcia, Caroline McCormack, Rui Xin Tham, Megan E O’Brien, Erica R Fuhrmeister, Kara L Nelson, Rose S Kantor, Amy J Pickering
July 28, 2025
An unusual genetic switch controls Mycobacterium avium pathogenesis, antibiotic resistance and colony morphology [Pre-print]
Hannah J Nilsson, Zoe Netter, Miles Tuncel, Nicholas E Garelis, Nabila Siddiqui, Mira Semaan, Rita M McCall, Kyla Dangerfield, Ella K Cox, Laura Britt, Mark Voorhies, Allison W Roberts, Gabriel Mitchell, Gerard A Cangelosi, William R Jacobs, Anita Sil, Jonathan M Budzik, Jeffery S Cox
July 28, 2025
Cleavage of the RNA polymerase II general transcription factor TFIIB es transcription during stress [Pre-print]
Leah Gulyas, Azra Lari, Sahil B Shah, Britt A Glaunsinger
July 25, 2025
Programmable kinetic barcoding for multiplexed RNA detection with Cas13a [Pre-print]
Sungmin Son, Amy Lyden, Carlos F Ng, Andres Dextre, Jeffrey Shu, Stephanie I Stephens, Parinaz Fozouni, Gavin J Knott, Dylan CJ Smock, Tina Y Liu, Daniela Boehm, Camille Simoneau, G Renuka Kumar, Jennifer A Doudna, Melanie Ott, Daniel A Fletcher
July 25, 2025
Hyaluronan Ameliorates Viral Pneumonia in Mice and Humans by Inhibiting E2F1 Transcription Factor
Vandy P Stober, Carol S Trempus, Flavia Galdi, Negin P Martin, Wesley Gladwell, Michael Cronce, Jeffery S Cox, Jay D Keasling, Jonathan Budzik, Shih-Heng Chen , Yosuke Sakamachi, Jian-Liang Li, Christopher A McGee, Daniel J Zaccaro, Jane S Der, Charles J Tucker, Erica Scappini, Javier Campos Gomez, Steven M Rowe, Mary K Cowman, Christina M Barkauskas, Patty J Lee, Matthew R Markovetz, Brian Button, David B Hill, Dorothea A Erxleben, Adam R Hall, Jian Liu, Yongmei Xu, Claudio Pedone, Raffaele Antonelli-Incalzi, Sadis Matalon, Rashmin C Savani, Stavros Garantziotis
