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Publications

CEND affiliates and fellows are research leaders - publishing new discoveries to accelerate progress against neglected and emerging diseases.

Publications

September 10, 2025

Genomic characterization of novel bat kobuviruses in Madagascar: Implications for viral evolution and zoonotic risk

Freddy L. Gonzalez, Gwenddolen Kettenburg, Hafaliana Christian Ranaivoson, Angelo Andrianiaina, Santino Andry, Vololoniaina Raharinosy, Tsiry Hasina Randriambolamanantsoa, Vincent Lacoste, Philippe Dussart, Jean-Michel Héraud, Cara E. Brook

September 10, 2025

Macrophages orchestrate elimination of Shigella from the intestinal epithelial cell niche via TLR-induced IL-12 and IFN-γ

Kevin D Eislmayr, Charlotte A Nichols, Fitty L Liu, Sudyut Yuvaraj, Janet Peace Babirye, Justin L Roncaioli, Jenna Vickery, Gregory M Barton, Cammie F Lesser, Russell E Vance

September 4, 2025

Lineage-specific defence systems of pandemic Vibrio cholerae

Melanie Blokesch and Kimberley D. Seed

September 1, 2025

Severe acute respiratory syndrome (SARS) mathematical models and disease parameters: a systematic review

Christian Morgenstern, Thomas Rawson, Isobel Routledge, Mara Kont, Natsuko Imai-Eaton, Janetta Skarp, Patrick Doohan, Kelly McCain, Rob Johnson, H Juliette T Unwin, Tristan Naidoo, Dominic P Dee, Kanchan Parchani, Bethan N Cracknell Daniels, Anna Vicco, Kieran O Drake, Paula Christen, Richard J Sheppard, Sequoia I Leuba, Joseph T Hicks, Ruth McCabe, Rebecca K Nash, Cosmo N Santoni, Gina Cuomo-Dannenburg, Sabine van Elsland, Sangeeta Bhatia, Anne Cori, Aaron Morris, Amy Dighe, Anna-Maria Hartner, Arran Hamlet, Ben Lambert, Bethan Cracknell Daniels, Charlie Whittaker, Cosmo Santoni, Cyril Geismar, Dariya Nikitin, David Jorgensen, Dominic Dee, Ed Knock, Ettie Unwin, Hayley Thompson, Ilaria Dorigatti, Jack Wardle, Joseph Hicks, Keith Fraser, Kelly Charniga, Kieran Drake, Lily Geidelberg, Lorenzo Cattarino, Mantra Kusumgar, Marc Baguelin, Pablo Perez Guzman, Paul Lietar, Rebecca Nash, Rich Fitzjohn, Richard Sheppard, Sequoia Leuba, Shazia Ruybal-Pesantez, Sreejith Radhakrishnan, Zulma Cucunuba Perez

September 1, 2025

Comparison of dengue, chikungunya, and Zika among children in Nicaragua across 18 years: a single-centre, prospective cohort study

Fausto Andres Bustos Carrillo, Sergio Ojeda, Nery Sanchez, Miguel Plazaola, Damaris Collado, Tatiana Miranda, Saira Saborio, Brenda Lopez Mercado, Jairo Carey Monterrey, Sonia Arguello, Lora Campredon, Zijin Chu, Colin J Carlson, Aubree Gordon, Angel Balmaseda, Guillermina Kuan, Eva Harris

August 30, 2025

Zika in Infants and Pregnancy (ZIP) study: results from a prospective international cohort study of prenatal Zika virus infection and adverse fetal and infant outcomes

Jill Farnell Lebov, Martha Nason, Kristen B Stolka, Ricardo Ximenes, Marisa M Mussi-Pinhata, Jack Moye, Carmen D Zorrilla, Carmen M Velez Vega, José F Cordero, Deolinda MF Scalabrin, Albert I Ko, Maria Elisabeth Lopes Moreira, Luiz Augusto Galvão, William Britt, Ernesto TA Marques, Angel Balmaseda, Eva Harris, Juan F Arias, Stacey Schultz-Cherry, Ana Lucía Garces, Nancy F Krebs, Theresa J Ochoa, César Augusto Ugarte-Gil, Elizabeth Fogleman, Erin Gabriel, Michael Welton, Carmen M Irizarry, Silvia Biason de Moura Negrini, Conrado Milani Coutinho, Demócrito de Barros Miranda-Filho, Ulisses Ramos Montarroyos, Marli Tenorio Cordeiro, Anna Gajewski, Jorge E Osorio, Lester Figueroa

August 13, 2025

Longitudinal antibody profiling after dengue reveals distinct dynamics by antibody specificity over 18 months (Pre-print)

Sandra Bos, Tulika Singh, José Victor Zambrana, Elias Duarte, Reinaldo Mercado-Hernandez, Julia Huffaker, Aaron Graber, Angel Balmaseda, Eva Harris

August 12, 2025

Cellular mechanisms underlying beneficial versus detrimental effects of bacterial antitumor immunotherapy

Jesse Garcia Castillo, Sebastian Fernandez, Timothy Campbell, Diego Gonzalez Ventura, Jacob Williams, Julia Ybarra, Nicole Flores Hernandez, Elina Wells, Daniel A. Portnoy, Michel DuPage

August 11, 2025

Bridging the Gap: Enhancing the Evaluation & Interpretation of Epidemic Forecasts for Researchers & Policymakers in Resource-Constrained Settings [Pre-print]

Paula Christen, Loice Achieng Ombajo, Anne Cori, Jeanette Dawa, Bimandra A Djaafara, Teresia Njoki Kimani, Camille MJ Schneider, Sabine L van Elsland, Mwangi Thumbi, Maria Veras, Charles Whittaker, Lilith K Whittles, Oliver J Watson

August 4, 2025

Multi-contrast machine learning improves schistosomiasis diagnostic performance

María Díaz de León Derby, Charles B Delahunt, Ethan Spencer, Jean T Coulibaly, Kigbafori D Silué, Isaac I Bogoch, Anne-Laure Le Ny, Daniel A Fletcher

August 4, 2025

Cell surface crowding is a tunable energetic barrier to cell-cell fusion

Daniel SW Lee, Liya F Oster, Sungmin Son, Daniel A Fletcher

August 4, 2025

Therapeutic Potential of Cyclodextrins Targeting Dengue Virus and SARS-CoV-2 Infection and Pathogenesis

Pedro H Carneiro, E Vanessa Jimenez-Posada, Francielle Tramontini Gomes de Sousa, Scott B Biering, Trishna S Patel, Samhita Bhat, Sarah Stanley, John Pak, Peter Laing, Tamas Sohajda, Eva Harris, P Robert Beatty

August 4, 2025

Role of the gut microbiome in frequent gut colonization with extended-spectrum β lactamase-producing Enterobacterales among Peruvian children

Maya L Nadimpalli, Neha Sehgal, Luismarcelo Rojas-Salvatierra, Robert H Gilman, Ashlee M Earl, Colin J Worby, Madison Schwab, Amy J Pickering, Monica J Pajuelo

August 1, 2025

Biomarkers of environmental enteric dysfunction and neurodevelopmental outcomes among children in rural Bangladesh and Kenya: a prospective cohort study

Gene G Ho, Beryl S Achando, Shahjahan Ali, Caitlin Hemlock, Helen O Pitchik, Christine P Stewart, Fahmida Tofail, Md Ziaur Rahman, Mohammad Alauddin, Gouthami Rao, Holly N Dentz, John P Buleti, Cecilia Nekesa, Charles D Arnold, Syeda L Famida, Md Saheen Hossen, Palash Mutsuddi, Salma Akther, Jessica A Grembi, Sophia T Tan, Sarah T Alauddin, Theodora Meerkerk, Marlene K Wolfe, Priscah Cheruiyot, Sammy M Njenga, Abul K Shoab, Mahbubur Rahman, Leanne Unicomb, Benjamin F Arnold, Patricia Kariger, Alan E Hubbard, John M Colford Jr, Amy J Pickering, Clair Null, Stephen P Luby, Lia CH Fernald, Andrew N Mertens, Audrie Lin

July 29, 2025

Solid Evidence and Liquid Gold: Trade-Offs of Processing Settled Solids, Whole Influent, or Centrifuged Influent for Codetecting Viral, Bacterial, and Eukaryotic Pathogens in Wastewater

Sooyeol Kim, Denise Garcia, Caroline McCormack, Rui Xin Tham, Megan E O’Brien, Erica R Fuhrmeister, Kara L Nelson, Rose S Kantor, Amy J Pickering

July 28, 2025

An unusual genetic switch controls Mycobacterium avium pathogenesis, antibiotic resistance and colony morphology [Pre-print]

Hannah J Nilsson, Zoe Netter, Miles Tuncel, Nicholas E Garelis, Nabila Siddiqui, Mira Semaan, Rita M McCall, Kyla Dangerfield, Ella K Cox, Laura Britt, Mark Voorhies, Allison W Roberts, Gabriel Mitchell, Gerard A Cangelosi, William R Jacobs, Anita Sil, Jonathan M Budzik, Jeffery S Cox

July 25, 2025

Programmable kinetic barcoding for multiplexed RNA detection with Cas13a [Pre-print]

Sungmin Son, Amy Lyden, Carlos F Ng, Andres Dextre, Jeffrey Shu, Stephanie I Stephens, Parinaz Fozouni, Gavin J Knott, Dylan CJ Smock, Tina Y Liu, Daniela Boehm, Camille Simoneau, G Renuka Kumar, Jennifer A Doudna, Melanie Ott, Daniel A Fletcher

July 25, 2025

Hyaluronan Ameliorates Viral Pneumonia in Mice and Humans by Inhibiting E2F1 Transcription Factor

Vandy P Stober, Carol S Trempus, Flavia Galdi, Negin P Martin, Wesley Gladwell, Michael Cronce, Jeffery S Cox, Jay D Keasling, Jonathan Budzik, Shih-Heng Chen , Yosuke Sakamachi, Jian-Liang Li, Christopher A McGee, Daniel J Zaccaro, Jane S Der, Charles J Tucker, Erica Scappini, Javier Campos Gomez, Steven M Rowe, Mary K Cowman, Christina M Barkauskas, Patty J Lee, Matthew R Markovetz, Brian Button, David B Hill, Dorothea A Erxleben, Adam R Hall, Jian Liu, Yongmei Xu, Claudio Pedone, Raffaele Antonelli-Incalzi, Sadis Matalon, Rashmin C Savani, Stavros Garantziotis